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The results of an analysis are shown and discussed in a markup fle that is used to create a PDF document. Researchers often do not explicitly document the relationships between fles that they used in their research. For example, the results of an analysis–a table or fgure–may be copied and pasted into a presentation document. It can be very diÿcult for future researchers to trace the table or fgure back to a particular statistical model and a particular data set without clear documentation. Therefore, it is important to make the links between your fles explicit.
Reproducible Research With R and RStudio
Christopher Gandrud
Argument names to functions should be descriptive and well documented. Arguments should generally have default values. Check arguments against a validity check.
Bioconductor - Package Guidelines
None
Even when having to write some things by hand like inventing new tests, usethis provides useful functions to help (e.g., create test files with usethis::use\_test\(\)).
Workflow automation tools for package developers
Maëlle Salmon
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